{"issue":{"state":"closed","pull_request":{"diff_url":null,"html_url":null,"patch_url":null},"user":{"avatar_url":"https://secure.gravatar.com/avatar/8961c1b53b048abbcd61cd5af181fd69?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png","gravatar_id":"8961c1b53b048abbcd61cd5af181fd69","url":"https://api.github.com/users/samseaver","login":"samseaver","id":1034017},"milestone":null,"assignee":null,"labels":[{"name":"FIGMODEL","color":"e10c02","url":"https://api.github.com/repos/ModelSEED/Model-SEED-core/labels/FIGMODEL"}],"updated_at":"2011-11-03T17:24:43Z","comments":2,"closed_at":"2011-11-03T17:24:43Z","url":"https://api.github.com/repos/ModelSEED/Model-SEED-core/issues/43","body":"I've not tried this in the BIO environment, but locally:\r\n\r\n1) The -biomass parameter doesn't work, it keeps looking in the same location (./data/MSModelFiles)\r\n\r\n2) The -filename parameter works, but if it is not used, then the filename that it looks for *must* have the user index in the filename, ie:\r\n\r\n`data/MSModelFiles/iJR904.45632.tbl1`\r\n\r\ninstead of \r\n\r\n`data/MSModelFiles/iJR904.tbl`\r\n\r\n3) The overwrite function works for sake of documentation, but if the script fails the first time (ie can't find biomass file) it doesn't roll back the inserted data, so the next time you run it, even though it \"failed\" you still have to overwrite.  This can be confusing.","html_url":"https://github.com/ModelSEED/Model-SEED-core/issues/43","number":43,"title":"loadmodelfromfile issues","id":1865109,"created_at":"2011-10-10T15:32:37Z"},"action":"closed"}