{"shas":[["7db08466ccb4b8718959253ed45fe895ce05bf88","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","The very first draft of a seemingly working version\n\nOf course it is doomed to contain tons of bugs","Yi Qiao"],["39dc1d02dfbf6c86e2b36761f61549a310be4833","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","On second thought, I decided to put the binary_reader utility into\nthe repository","Yi Qiao"],["e39c56cfdd2a97bb0f30d53d78829035d16e3db9","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","A condition checking is added to the result of BamReader::Open","Yi Qiao"],["64d941a5cf7b81c785a887a509303e3229044089","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","An error has been corrected where bai filename is generated","Yi Qiao"],["66129f6b5f36a06044f34c4593cf972e1d3ccdc0","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Merge branch 'master' of github.com:yiq/CNVSENSOR","Yi Qiao"],["f52e3ca44907a287d37470c376632c631132d8ee","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Due to unknown reason, BamReader object throws out error if been reused. So instead of\nusing one reader object, it is deleted and re-newed every time a new file is being open","Yi Qiao"],["63f29e8f2e9934be43df82e8a59bf743cd86b7cc","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Merge branch 'master' of git://github.com/jiantao/CNVSENSOR","Yi Qiao"],["5cd5fbb4a54d776037325136e0a90e1564a67a4a","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Changed the way the data read from file is stored from array of array to\nflat memory space.\n\nA new command line option '-l <fn>' has been added to bam_loader to\noptionally include bam filenames from a list","Yi Qiao"],["c9cbfb891c3d72a149fe62ffde6074368a2f415a","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","An error that prevent binary_reader from compiling has been corrected","Yi Qiao"],["fc160c1d970cb9f43ed612a8e89d8b9eb3231f14","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Some tweaks on how to process the command line arguments","Yi Qiao"],["c20308c2a900545e871c2dd41a5c273838122b9b","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","A bug has been fixed related to not completely transited from *argv to\nfilename vector","Yi Qiao"],["4b468cfbb15d61a42d41b4b5a711dfbcbf000f18","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Now it's really fixed","Yi Qiao"],["014ee902b27f3aeee17230cd22dce448ca997414","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Fixed a bug that the program was using obsolette 'argc' as n_samples","Yi Qiao"],["e44fdb71682e3a85bcd417ab39bc95766597b864","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","A bug has been fixed in the code where the sample name was derived from\nthe filename","Yi Qiao"],["02b1bd03c9edfcf75c625f68970e01e557be509d","4305d784e6c546b90609493ff553d3f741c877ec@gmail.com","Section about bam_loader has been included into the README file.","Yi Qiao"]],"repo":"jiantao/CNVSENSOR","actor":"yiq","ref":"refs/heads/master","size":15,"head":"02b1bd03c9edfcf75c625f68970e01e557be509d","actor_gravatar":"4acb15400067def69a70924eccdc5969","push_id":25220607}