{"shas":[["aa22721d3d501dd8ee90ae4c3ce9a67c9b78b32f","3e3f4683fc8681910829f55e96e4b04ecdf7c6eb@fhcrc.org","added fixed frequency raxml file","Erick Matsen"],["07f182cceccd7a4b636b6aa8e20acbfa57857ff5","ac02e0dfd4ed6d445d5f6f9b7481d810e9265ad2@fhcrc.org","added empirical_frequencies field support for CONTENTS.json output","Brian Hodges"],["a2eb1efe6dc43b4ec3bf39bf78d03b309f08adca","ac02e0dfd4ed6d445d5f6f9b7481d810e9265ad2@fhcrc.org","minor cleanup, also moved empirical_frequencies field to the correct file (json model)","Brian Hodges"],["42c1a3d6c8286908a08d4273921ab7bc68a194f9","ac02e0dfd4ed6d445d5f6f9b7481d810e9265ad2@fhcrc.org","empirical_frequencies now always set to true for nucleotide alignments.  corrected json output for unit tests to include new empirical_frequencies field","Brian Hodges"],["43592521e881989bda4785113f36f76ffc236e65","ac02e0dfd4ed6d445d5f6f9b7481d810e9265ad2@fhcrc.org","Merge branch 'master' into infernal","Brian Hodges"],["8b247fbf1c0c428393157ddc8034c4ec2d3b3612","ac02e0dfd4ed6d445d5f6f9b7481d810e9265ad2@fhcrc.org","renamed pkg_align.py to refpkg_align.py.  changes to allow for query sequence alignment and merging of results with reference alignment","Brian Hodges"]],"repo":"fhcrc/taxtastic","actor":"bhodges","ref":"refs/heads/infernal","size":6,"head":"8b247fbf1c0c428393157ddc8034c4ec2d3b3612","actor_gravatar":"35bb3fe426342641f7c5c92fd2a4a5b7","push_id":25266424}