{"head":"794f2758710eb1d26cb43c757c9aedc0aafcedbe","size":2,"push_id":45832110,"shas":[["24b72334b3b30da8384f2ffcf03ab673502c2320","1d0c6f32bb65b8defcf996a778a48a2d5cfb7c64@broadinstitute.org","UnifiedGenotyper now correctly initializes the VariantAnnotator engine.\n\nThis allows the annotation classes to perform any necessary initialization/validation.\nFor example, it allows the SnpEff annotator to (among other things) validate its rod binding.\nThis will prevent a NullPointerException when SnpEff annotation is requested but no rod binding\nis present.\n\nAdded an integration test to cover this case so that it doesn't break again.","David Roazen"],["794f2758710eb1d26cb43c757c9aedc0aafcedbe","1d0c6f32bb65b8defcf996a778a48a2d5cfb7c64@broadinstitute.org","SnpEff is now marked as a RodRequiringAnnotation instead of an ExperimentalAnnotation.\n\nHaving SnpEff grouped with the Experimental annotations was proving problematic, since it\nrequires a rod. Placing it in its own group should improve the situation somewhat, making it\neasier to request \"all annotations except for SnpEff\".","David Roazen"]],"ref":"refs/heads/master"}