{"head":"8ec461ba1d141dbff77e163a1e78a82b1fa2e716","size":16,"push_id":45979672,"shas":[["d86d6b9042ce84abc88f40378044e39372c49072","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Incomplete - task : Organise reference scripts repository ","Benedict"],["43f8462b39405a6c1b383bc7ff0e022558557de0","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Incomplete - task : Organise reference scripts repository ","Benedict"],["63459280b2f2908673b1dc675ac1233b292ac643","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Change to contiguity","benedictpaten"],["7e1742ad0915daec1d0437a0068761b396aa5369","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Fix to allow zero length sequences to be handled by the sample\npoints function","Benedict"],["003be780d3e7a78015eb29998d16611b8da530a0","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Merge branch 'development' of github.com:benedictpaten/assemblaLib into development","Benedict"],["e5c15dcba7f241fdb11b2d540e34aa51fc8f4478","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Oops, fix to the last fix","Benedict"],["16984368f71724ef3513f30dd2ef307d793ee04b","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Fixed bug in contiguity stats","Benedict"],["8d8bef929780b934b6b2b0b225b5c572c3658489","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Fix for reference scripts when deciding if an adjacency is consistent.","Benedict"],["490fd00f51d568b25c8bd7273bfcf58c9e3de549","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Adding functions for extracting contig path and scaffold path\nintervals","Benedict"],["f81fbfd2c30a2f3265cf34cf0aa1a758243f882e","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Fixes to beds","benedictpaten"],["0c6bdc21cf4343bb7a28836137e66c9dd30efcbc","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Adding an option to ignore duplicated columns","benedictpaten"],["9679e7677c2725469d779b54848fce7f018b1815","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Fixing bug in duplication check for contiguity samples","Benedict"],["9096352f0da4ac83a0c0dcd511a400107e1f09d6","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Updated interval script for calculating 'perfect paths'","Benedict"],["ac54caf4207bb010a15e872f647c436cdc2df430","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Adding tests to perfect intervals code","benedictpaten"],["edf2aa3b2d39196d96d95ff4eeb54bc0bd325c99","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Adding extra parameter to sampling function to prevent the same pairs\nbeing sampled too often","benedictpaten"],["8ec461ba1d141dbff77e163a1e78a82b1fa2e716","726fa70a29b6655ac4083f54d26ebec7599f84d2@gmail.com","Added functions for better examining indels","Benedict"]],"ref":"refs/heads/master"}