{"issue":{"created_at":"2011-11-26T20:11:16Z","state":"open","updated_at":"2011-11-29T15:35:06Z","user":{"gravatar_id":"59f37362f734052e986709aaadc0943e","id":1211654,"url":"https://api.github.com/users/horowitzamir","login":"horowitzamir","avatar_url":"https://secure.gravatar.com/avatar/59f37362f734052e986709aaadc0943e?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png"},"comments":3,"body":"Hi all,\r\n\r\nI was wondering if anyone has seen the following error message before while trying to run the SPADE plugin:\r\n\r\nLoading required package: igraph\r\nLoading required package: methods\r\nScalable Robust Estimators with High Breakdown Point (version 1.3-01)\r\nError in FUN(X[[1L]], ...) : \r\n  Panel files must be a subset of analysis files\r\nCalls: SPADE.driver -> lapply -> FUN\r\nExecution halted\r\n\r\nThis has been working fine for me since installing the program, but suddenly I received the above message. I have tried restarting my computer, but unfortunately, this did not correct it.\r\n\r\nThanks very much.\r\n\r\nAmir","assignee":null,"id":2356769,"number":16,"pull_request":{"patch_url":null,"html_url":null,"diff_url":null},"labels":[],"title":"SPADE plugin not working","closed_at":null,"html_url":"https://github.com/nolanlab/spade/issues/16","url":"https://api.github.com/repos/nolanlab/spade/issues/16","milestone":null},"action":"created","comment":{"created_at":"2011-11-29T15:35:06Z","updated_at":"2011-11-29T15:35:06Z","user":{"gravatar_id":"59f37362f734052e986709aaadc0943e","id":1211654,"url":"https://api.github.com/users/horowitzamir","login":"horowitzamir","avatar_url":"https://secure.gravatar.com/avatar/59f37362f734052e986709aaadc0943e?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png"},"body":"Hi Erin, \n\n\nFirst off, thanks very much for the help with getting the bug worked out. The cityscape is working beautiful right now. I was, however, wondering if it is possible to draw gates and generate statistics within the cityscape program. Could you please confirm or disconfirm this for me? \n\n\nThanks again \n\n\nbest wishes \n\n\nAmir \n\n\n\n\n\n_________________ Amir Horowitz, PhD \nPostdoctoral Fellow / Department of Structural Biology / Parham Laboratory / Stanford University School of Medicine \nFairchild Bldg / Room D100 / 299 Campus Drive West / Stanford, CA 94305-5126 \n----- Original Message -----\nFrom: \"Erin Simonds\" <reply@reply.github.com> \nTo: \"horowitzamir\" <amirh@stanford.edu> \nSent: Saturday, November 26, 2011 12:27:43 PM \nSubject: Re: [spade] SPADE plugin not working (#16) \n\nThis usually means that there is a disagreement between the files in the \nfolder you are analyzing, and the runSPADE.R file. Perhaps you moved an \nFCS file, or renamed one? Maybe you edited the runSPADE.R file by hand? \nIf you don't feel like troubleshooting, you should be able to fix the \nproblem by setting up a new analysis from the beginning in the Cytoscape \ninterface. Post back here if you still have trouble. \n\n\n\nOn Sat, Nov 26, 2011 at 12:11 PM, horowitzamir < \nreply@reply.github.com \n> wrote: \n\n> Hi all, \n> \n> I was wondering if anyone has seen the following error message before \n> while trying to run the SPADE plugin: \n> \n> Loading required package: igraph \n> Loading required package: methods \n> Scalable Robust Estimators with High Breakdown Point (version 1.3-01) \n> Error in FUN(X[[1L]], ...) : \n> Panel files must be a subset of analysis files \n> Calls: SPADE.driver -> lapply -> FUN \n> Execution halted \n> \n> This has been working fine for me since installing the program, but \n> suddenly I received the above message. I have tried restarting my computer, \n> but unfortunately, this did not correct it. \n> \n> Thanks very much. \n> \n> Amir \n> \n> --- \n> Reply to this email directly or view it on GitHub: \n> https://github.com/nolanlab/spade/issues/16 \n> \n\n--- \nReply to this email directly or view it on GitHub: \nhttps://github.com/nolanlab/spade/issues/16#issuecomment-2883695","id":2931428,"url":"https://api.github.com/repos/nolanlab/spade/issues/comments/2931428"}}