{"shas":[["cc2a8883c8f46c508f431eeb701f5d776457cc65","3a38ded2061acb2967bcfb4a92f2665dab39b16d@bc.edu","support complex alleles\n\nComplex events are block substitutions, e.g. ATG -> TCCC where the\nsubstituted sequence has a different length than the original sequence.\nThese events can have many correct, but differing interpretations as\nalignments (a deletion + SNP, insertion + deletion, etc.).  FreeBayes\nnow handles them in the same context as other small alleles.  This\nbehavior is activated by the --complex flag (similar to --indels,\n--mnps).","Erik Garrison"],["415051dcef60d188db6afd45c36ad6c5a6b35469","3a38ded2061acb2967bcfb4a92f2665dab39b16d@bc.edu","version 0.8.4\n\nCheckpoint, reflects addition of complex allele processing.","Erik Garrison"]],"ref":"refs/heads/master","size":2,"head":"415051dcef60d188db6afd45c36ad6c5a6b35469","push_id":35411890}