{"issue":{"created_at":"2011-11-23T11:40:25Z","state":"open","updated_at":"2011-11-24T11:25:27Z","user":{"gravatar_id":"9d6f72f9266ddc63b93d24ceb27684f3","id":828478,"url":"https://api.github.com/users/marina-manrique","login":"marina-manrique","avatar_url":"https://secure.gravatar.com/avatar/9d6f72f9266ddc63b93d24ceb27684f3?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png"},"comments":1,"body":"@pablopareja It would be good to format the input genome FASTA file so the FASTA file to annotate has always the same header structure, @rtobes and I have decided this could be an appropriate header\r\n\r\n>CONTIG_ID|Former header\r\n\r\nwhere CONTIG_ID is the ProjectName+6 chars number, for example ECO000001 ECO000002\r\n\r\nDoing this way you could always get the contig ID splitting by '|' and getting the fist token.\r\n\r\nBesides the formatted FASTA file it'd be good to have a tsv file with the CONTIG_ID and the corresponding former header\r\n\r\n","assignee":{"gravatar_id":"47fd9c15d57a0c010619e37dda748519","id":545342,"url":"https://api.github.com/users/pablopareja","login":"pablopareja","avatar_url":"https://secure.gravatar.com/avatar/47fd9c15d57a0c010619e37dda748519?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png"},"id":2328791,"pull_request":{"patch_url":null,"html_url":null,"diff_url":null},"number":14,"labels":[{"name":"improvement","color":"e102d8","url":"https://api.github.com/repos/bg7/BG7/labels/improvement"}],"title":"tool for formatting input genome fasta file","closed_at":null,"html_url":"https://github.com/bg7/BG7/issues/14","milestone":null,"url":"https://api.github.com/repos/bg7/BG7/issues/14"},"action":"created","comment":{"created_at":"2011-11-24T11:25:27Z","updated_at":"2011-11-24T11:25:27Z","user":{"gravatar_id":"47fd9c15d57a0c010619e37dda748519","id":545342,"url":"https://api.github.com/users/pablopareja","login":"pablopareja","avatar_url":"https://secure.gravatar.com/avatar/47fd9c15d57a0c010619e37dda748519?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png"},"body":"Ok, I'm on it !\r\nJust one thing, would you mind if the contig ids had a syntax like: ECO1, ECO2, .... ECO1010.... ECOXXX instead of writing all those ugly zeros? ","id":2861480,"url":"https://api.github.com/repos/bg7/BG7/issues/comments/2861480"}}