{"issue":{"state":"open","pull_request":{"diff_url":"https://github.com/biopython/biopython/pull/22.diff","html_url":"https://github.com/biopython/biopython/pull/22","patch_url":"https://github.com/biopython/biopython/pull/22.patch"},"user":{"avatar_url":"https://secure.gravatar.com/avatar/60ec834d320dd872299b289d36e71aa6?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png","gravatar_id":"60ec834d320dd872299b289d36e71aa6","url":"https://api.github.com/users/brandoninvergo","login":"brandoninvergo","id":108338},"milestone":null,"assignee":null,"labels":[],"updated_at":"2011-11-03T08:51:09Z","comments":1,"closed_at":null,"url":"https://api.github.com/repos/biopython/biopython/issues/22","body":"These changes and additions are for supporting reading and writing of the Phylip sequential format (see http://evolution.genetics.washington.edu/phylip/doc/main.html#inputfiles second half of \"Data file format\"). In addition to adding PhylipSequentialIterator and PhylipSequentialWriter classes to Bio.AlignIO.PhylipIO, I also edited Tests/test_AlignIO.py, I added two simple test files to Tests/Phylip and I regenerated the output of test_AlignIO.py. The unit tests passed in Linux using Python 2.7.2 and Python 3.2.2\r\n\r\n\r\nRedmine Issue reference: https://redmine.open-bio.org/issues/3303","html_url":"https://github.com/biopython/biopython/issues/22","number":22,"title":"Parse/write Phylip sequential format","id":2130350,"created_at":"2011-11-03T08:49:31Z"},"action":"created","comment":{"user":{"avatar_url":"https://secure.gravatar.com/avatar/60ec834d320dd872299b289d36e71aa6?d=https://a248.e.akamai.net/assets.github.com%2Fimages%2Fgravatars%2Fgravatar-140.png","gravatar_id":"60ec834d320dd872299b289d36e71aa6","url":"https://api.github.com/users/brandoninvergo","login":"brandoninvergo","id":108338},"updated_at":"2011-11-03T08:51:09Z","url":"https://api.github.com/repos/biopython/biopython/issues/comments/2614517","body":"One thing I didn't change is the copyright statement for PhylipIO.py and test_AlignIO.py, because I wasn't sure how to proceed. I do not have a problem with transferring copyright of my additions to Peter, who currently owns the copyright on these modules. Nonetheless, the date in these statements should still be updated.","id":2614517,"created_at":"2011-11-03T08:51:09Z"}}