{"ref":"refs/heads/pipeline","commits":[{"author":{"name":"andrewjpage","email":"52059a69525047a1b96be4170b4beb63617e90ae@gmail.com"},"message":"Revert \"give vcf files a unique name so many can be directly symlinked from the same directory\"\n\nThis reverts commit 1491a620686cb14e0ea78fae2c2f8e0ac64bfbb8.","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/5cfb64337f9ff5648aa569928c0de7f5fed6cb02","sha":"5cfb64337f9ff5648aa569928c0de7f5fed6cb02"},{"author":{"name":"Craig Porter","email":"02da8435661cce3e2733a1babe2bc86f66cf816d@sanger.ac.uk"},"message":"Added do_samtools_rmdup parameter to LSF script that calls run_graphs().","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/0a2529cd2659ef138b4b47c290bf13da6f5aa46f","sha":"0a2529cd2659ef138b4b47c290bf13da6f5aa46f"},{"author":{"name":"CraigPorter","email":"02da8435661cce3e2733a1babe2bc86f66cf816d@sanger.ac.uk"},"message":"Merge pull request #31 from CraigPorter/test-rmdup\n\nAdded do_samtools_rmdup parameter to LSF script that calls run_graphs().","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/d65487244fc68d7c753227ae9dd46cf4beba8db3","sha":"d65487244fc68d7c753227ae9dd46cf4beba8db3"},{"author":{"name":"andrewjpage","email":"52059a69525047a1b96be4170b4beb63617e90ae@gmail.com"},"message":"Merge branch 'pipeline' of github.com:sanger-pathogens/vr-codebase into pipeline","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/fac912076176083641defdbe1ef7b394347eda77","sha":"fac912076176083641defdbe1ef7b394347eda77"},{"author":{"name":"andrewjpage","email":"52059a69525047a1b96be4170b4beb63617e90ae@gmail.com"},"message":"lookup aliquots table to find libraries off library request","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/6c929b0e47d30519500480f4018c5b9c8d5c90e1","sha":"6c929b0e47d30519500480f4018c5b9c8d5c90e1"},{"author":{"name":"andrewjpage","email":"52059a69525047a1b96be4170b4beb63617e90ae@gmail.com"},"message":"lookup sample id for library from aliquots table","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/ebee0905da5c430b1be0caa6362cc046357d6768","sha":"ebee0905da5c430b1be0caa6362cc046357d6768"},{"author":{"name":"andrewjpage","email":"52059a69525047a1b96be4170b4beb63617e90ae@gmail.com"},"message":"only return one library and try to get the one with tag ids if available","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/db108c579808264f3647b19e026d360d68a1014f","sha":"db108c579808264f3647b19e026d360d68a1014f"},{"author":{"name":"andrewjpage","email":"52059a69525047a1b96be4170b4beb63617e90ae@gmail.com"},"message":"lookup tag map id","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/eb204c44577cf3174d6c4f91e413756db1b40d97","sha":"eb204c44577cf3174d6c4f91e413756db1b40d97"},{"author":{"name":"andrewjpage","email":"52059a69525047a1b96be4170b4beb63617e90ae@gmail.com"},"message":"Merge pull request #32 from andrewjpage/library_aliquots_in_sfind\n\nLibrary aliquots in sfind","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/d5933c0f1fb5ff6c96b034089d14113072de23e6","sha":"d5933c0f1fb5ff6c96b034089d14113072de23e6"},{"author":{"name":"Craig Porter","email":"02da8435661cce3e2733a1babe2bc86f66cf816d@sanger.ac.uk"},"message":"Updated schema to support 'Single ended hi seq sequencing'","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/2fe0abd96cc4b70a8ca370195d7cb67abf1f4030","sha":"2fe0abd96cc4b70a8ca370195d7cb67abf1f4030"},{"author":{"name":"CraigPorter","email":"02da8435661cce3e2733a1babe2bc86f66cf816d@sanger.ac.uk"},"message":"Merge pull request #33 from CraigPorter/update-schema\n\nUpdated schema to support 'Single ended hi seq sequencing'","url":"https://api.github.com/repos/CraigPorter/vr-codebase/commits/be1c95d9526e6945e8dc108e5d0dffa67a3046b2","sha":"be1c95d9526e6945e8dc108e5d0dffa67a3046b2"}],"head":"be1c95d9526e6945e8dc108e5d0dffa67a3046b2","size":11,"push_id":49465051}