latools/latools.py
def filter_reports(self, analytes, filt_str='all', nbin=5, samples=None,
                       outdir=None, subset='All_Samples'):
        """
        Plot filter reports for all filters that contain ``filt_str``
        in the name.
        """
        if outdir is None:
            outdir = self.report_dir + '/filters/' + filt_str
            if not os.path.isdir(self.report_dir + '/filters'):
                os.mkdir(self.report_dir + '/filters')
        if not os.path.isdir(outdir):
            os.mkdir(outdir)

        if samples is not None:
            subset = self.make_subset(samples)

        samples = self._get_samples(subset)

        with self.pbar.set(total=len(samples), desc='Drawing Plots') as prog:
            for s in samples:
                _ = self.data[s].filter_report(filt=filt_str,
                                            analytes=analytes,
                                            savedir=outdir,
                                            nbin=nbin)
                prog.update()
            # plt.close(fig)
        return
def filter_reports(self, analytes, filt_str='all', nbin=5, samples=None,
                       outdir=None, subset='All_Samples'):
        """
        Plot filter reports for all filters that contain ``filt_str``
        in the name.
        """
        if outdir is None:
            outdir = self.report_dir + '/filters/' + filt_str
            if not os.path.isdir(self.report_dir + '/filters'):
                os.mkdir(self.report_dir + '/filters')
        if not os.path.isdir(outdir):
            os.mkdir(outdir)

        if samples is not None:
            subset = self.make_subset(samples)

        samples = self._get_samples(subset)

        with self.pbar.set(total=len(samples), desc='Drawing Plots') as prog:
            for s in samples:
                _ = self.data[s].filter_report(filt=filt_str,
                                            analytes=analytes,
                                            savedir=outdir,
                                            nbin=nbin)
                prog.update()
            # plt.close(fig)
        return
Plot filter reports for all filters that contain ``filt_str``
        in the name.