scout/utils/requests.py
def fetch_mim_files(api_key, mim2genes=False, mimtitles=False, morbidmap=False, genemap2=False):
    """Fetch the necessary mim files using a api key
    
    Args:
        api_key(str): A api key necessary to fetch mim data
    
    Returns:
        mim_files(dict): A dictionary with the neccesary files
    """

    LOG.info("Fetching OMIM files from https://omim.org/")
    mim2genes_url =  'https://omim.org/static/omim/data/mim2gene.txt'
    mimtitles_url= 'https://data.omim.org/downloads/{0}/mimTitles.txt'.format(api_key)
    morbidmap_url = 'https://data.omim.org/downloads/{0}/morbidmap.txt'.format(api_key)
    genemap2_url =  'https://data.omim.org/downloads/{0}/genemap2.txt'.format(api_key)
        
    mim_files = {}
    mim_urls = {}
    
    if mim2genes is True:
        mim_urls['mim2genes'] = mim2genes_url
    if mimtitles is True:
        mim_urls['mimtitles'] = mimtitles_url
    if morbidmap is True:
        mim_urls['morbidmap'] = morbidmap_url
    if genemap2 is True:
        mim_urls['genemap2'] = genemap2_url

    for file_name in mim_urls:
        url = mim_urls[file_name]
        mim_files[file_name] = fetch_resource(url)

    return mim_files
def fetch_mim_files(api_key, mim2genes=False, mimtitles=False, morbidmap=False, genemap2=False):
    """Fetch the necessary mim files using a api key
    
    Args:
        api_key(str): A api key necessary to fetch mim data
    
    Returns:
        mim_files(dict): A dictionary with the neccesary files
    """

    LOG.info("Fetching OMIM files from https://omim.org/")
    mim2genes_url =  'https://omim.org/static/omim/data/mim2gene.txt'
    mimtitles_url= 'https://data.omim.org/downloads/{0}/mimTitles.txt'.format(api_key)
    morbidmap_url = 'https://data.omim.org/downloads/{0}/morbidmap.txt'.format(api_key)
    genemap2_url =  'https://data.omim.org/downloads/{0}/genemap2.txt'.format(api_key)
        
    mim_files = {}
    mim_urls = {}
    
    if mim2genes is True:
        mim_urls['mim2genes'] = mim2genes_url
    if mimtitles is True:
        mim_urls['mimtitles'] = mimtitles_url
    if morbidmap is True:
        mim_urls['morbidmap'] = morbidmap_url
    if genemap2 is True:
        mim_urls['genemap2'] = genemap2_url

    for file_name in mim_urls:
        url = mim_urls[file_name]
        mim_files[file_name] = fetch_resource(url)

    return mim_files
Fetch the necessary mim files using a api key
    
    Args:
        api_key(str): A api key necessary to fetch mim data
    
    Returns:
        mim_files(dict): A dictionary with the neccesary files