gseapy/parser.py
def gsea_cls_parser(cls):
    """Extract class(phenotype) name from .cls file.

    :param cls: the a class list instance or .cls file which is identical to GSEA input .
    :return: phenotype name and a list of class vector.
    """

    if isinstance(cls, list) :
        classes = cls
        sample_name= unique(classes)
    elif isinstance(cls, str) :
        with open(cls) as c:
            file = c.readlines()
        classes = file[2].strip('\n').split(" ")
        sample_name = file[1].lstrip("# ").strip('\n').split(" ")
    else:
        raise Exception('Error parsing sample name!')

    return sample_name[0], sample_name[1], classes
def gsea_cls_parser(cls):
    """Extract class(phenotype) name from .cls file.

    :param cls: the a class list instance or .cls file which is identical to GSEA input .
    :return: phenotype name and a list of class vector.
    """

    if isinstance(cls, list) :
        classes = cls
        sample_name= unique(classes)
    elif isinstance(cls, str) :
        with open(cls) as c:
            file = c.readlines()
        classes = file[2].strip('\n').split(" ")
        sample_name = file[1].lstrip("# ").strip('\n').split(" ")
    else:
        raise Exception('Error parsing sample name!')

    return sample_name[0], sample_name[1], classes
Extract class(phenotype) name from .cls file.

    :param cls: the a class list instance or .cls file which is identical to GSEA input .
    :return: phenotype name and a list of class vector.