treetime/treeanc.py
def _branch_length_to_gtr(self, node):
        """
        Set branch lengths to either mutation lengths of given branch lengths.
        The assigend values are to be used in the following ML analysis.
        """
        if self.use_mutation_length:
            return max(ttconf.MIN_BRANCH_LENGTH*self.one_mutation, node.mutation_length)
        else:
            return max(ttconf.MIN_BRANCH_LENGTH*self.one_mutation, node.branch_length)
def _branch_length_to_gtr(self, node):
        """
        Set branch lengths to either mutation lengths of given branch lengths.
        The assigend values are to be used in the following ML analysis.
        """
        if self.use_mutation_length:
            return max(ttconf.MIN_BRANCH_LENGTH*self.one_mutation, node.mutation_length)
        else:
            return max(ttconf.MIN_BRANCH_LENGTH*self.one_mutation, node.branch_length)
Set branch lengths to either mutation lengths of given branch lengths.
        The assigend values are to be used in the following ML analysis.